2009-12-14: Notice to Haploview users
Recently, there are several questions about Haploview data format errors, and these errors were observed when users tried to analyze HapMap release 27 data dumped from HapMap. The current Haploview version (4.1) does not work with release 27 data. Haploview will generate a software error similar to "Hapmap data format error: NA06984" when trying to open the data.
The r27 data format will be supported by next Haploview version. There is a beta test version that is supposed to work and it can be obtained from http://www.broadinstitute.org/haploview/haploview-downloads. But since it is NOT an official release version, please use it base on your own judgment.
2009-12-10: Corrected HapMap3 phased haplotypes available for chromosome X
Phased haplotypes for consensus HapMap3 release 2 data for chromosome X has been corrected and the new data are now available for bulk download. Sorry for any inconvenience this might have caused.
2009-12-02: HapMap3 phased haplotypes available for chromosome X
Phased haplotypes for consensus HapMap3 release 2 data has been phased for chromosome X and are now available for bulk download. [Update: The downloading was disabled because several users have found that there are repeating data in some of the chrX phasing data files. The data source is being contacted and the downloading will be enabled as soon as the problem is cleared.]
2009-11-18: Short downtime for hardware maintenance
There will be a 30-minute downtime for Hapmap site on Nov. 23, 2009 between 8:30 am - 9:00 am (EST). Sorry for any inconvenience. [Update: Maintenance completed.]
2009-11-05: NCBI Scheduled maintenance
NCBI servers will undergo maintenance beginning November 13 at 3:00 p.m. to November 14 at 8:00 p.m. (EST). Therefore, some NCBI services may be intermittently slow or inaccessible. Please contact NCBI with concerns: info at ncbi.nlm.nih.gov. [Update: NCBI Scheduled maintenance compleleted.]2009-11-03: Database maintenance notice
HapMap is scheduled to have a database maintenance from 5:00pm 11/06/2009 - 8:00am 11/09/2009 EST. The site will be inaccessible during the maintainence. Sorry for the inconvenience. [Update: Database maintenance compleleted.]
2009-04-02: HapMap3 CEL files available
Raw signal intensity data from HapMap3 genotypes on the Genome-Wide Human SNP Array 6.0 are now available for bulk download.
2009-02-09: HapMap3 Phased Haplotypes available
Phased haplotypes for consensus HapMap3 release 2 data has been phased for autosomes are now available for bulk download.
2009-02-06: HapMap Public Release #27 (merged II+III)
Genotypes and frequency data for the three phases of the project (I+II: rel #24 and III: release #2), were combined in NCBI build 36 (dbSNP b126) coordinates. Data is available for downloading and also available for browsing. Click here to read the latest release notes.
2009-01-07: HapMap Phase 3 draft 2 release available for download
Genotypes and frequency data for phase 3 (NCBI build 36, dbSNP b126) of the HapMap are available for bulk download. This dataset will subsequently be merged with phase I+II data, and once merged, the complete dataset will be made available in the HapMap genome browser and HapMart utility. Here are some notes and SNP counts for this dataset.
- Old News
